Bioinformatics Links Directory : Sequence Retrieval and SubmissionThis section contains links for sequence retrieval and submission. The resources include alignment, sequence analysis as well as visualization tools.MartView- (Found July 2, 2008 ) The Ensembl EnsMart Genome Browser (MartView) is a tool for data retrieval and data mining that integrates data from Ensembl. Through the web interface MartView allows you to apply a series of filters to create custom datasets which can be converted to several useful output formats.http://www.ensembl.org/Multi/martview FIE2.0- (Found July 2, 2008 ) 5' end Information Extraction v2 (FIE2) identifies and extracts nucleotide sequence around the promoter region of genes and their translation initiation sites (TIS). User can search by geneprotein name or Locus ID.http://research.i2r.a-star.edu.sg/FIE2.0/ FeatureExtract- (Found July 2, 2008 ) The FeatureExtract server extracts sequence and feature annotations, such as intronexon structure, from GenBank entries and other GenBank format files.http://www.cbs.dtu.dk/services/FeatureExtract/ Entrez- (Found July 2, 2008 ) NCBI information retrieval system, including GenBank, MMDB (structures), genomes, population sets, OMIM, taxonomy and PubMed.http://www.ncbi.nlm.nih.gov/Entrez/index.html BioMart- (Found July 2, 2008 ) BioMart is an interactive data integration system facilitating large-scale data queries. It can be installed and used in-house, or with one of the existing data sources to which is has already been applied (ie. UniProt, Ensembl).http://www.ebi.ac.uk/biomart/ BankIt- (Found July 2, 2008 ) Web-based submission of one or a few sequences to GenBank.http://www.ncbi.nlm.nih.gov/BankIt/ WEBIN- (Found July 2, 2008 ) WEBIN is the internet tool for the submission of nucleotide sequences to the EMBL database. It is a service offered by the European Bioinformatics Institute (EBI), an outstation of the European Molecular Biology Laboratory.http://www.ebi.ac.uk/embl/Submission/webin.html |