Bioinformatics Links Directory : Protein Expression

This section contains links to protein expression data and resources for analysis of data including 2D gels.

ExPASy 2-D PAGE databases and services - (Found July 2, 2008 )

References to known 2-D PAGE database servers, as well as to 2-D PAGE related servers and services.
http://us.expasy.org/ch2d/2d-index.html

GELBANK - (Found July 2, 2008 )

GELBANK is a database of 2D gel images of proteomes for species with completed genomes. The user can search by sequence description or fragment, or by gel characteristics. Links are made between the sequence and gel when available.
http://gelbank.anl.gov/

GelScape and GelBank - (Found July 2, 2008 )

GelScape is a platform-independent 1D and 2D gel analysis system that is freely available. Features include the ability to mark spots, to measure spot intensities and to archive gel images and annotations to the public database GelBank. Includes searchable access to GelBank's repository.
http://www.gelscape.ualberta.ca/

GeneExpress2.1 - (Found July 2, 2008 )

Integrated system for data analysis with information about expression and gene networks, also contains transcriptional regulatory regions database (TRRD).
http://wwwmgs.bionet.nsc.ru/mgs/gnw/

JVirGel - (Found July 2, 2008 )

JVirGel creates a virtual 2-D gel based on theoretical molecular weights and calculated isoelectric points from a set of input proteins or proteomes.
http://www.jvirgel.de/

NCI Flicker - (Found July 2, 2008 )

Flicker provides the means to compare images from different internet sources using a java-enabled web browser. It was originally designed for the comparison of 2D gels.
http://www.lecb.ncifcrf.gov/flicker/

OPTIMIZER - (Found July 2, 2008 )

OPTIMIZER is an application that optimizes the codon usage of a DNA sequence. This server can be used to predict and optimize the level expression of a gene in heterologous gene expression systems.
http://genomes.urv.es/OPTIMIZER/

SWISS-2DPAGE - (Found July 2, 2008 )

This is a 2D gel electrophoresis database containing data for proteins identified on SDS-PAGE or 2D-PAGE reference maps.
http://us.expasy.org/ch2d/