Bioinformatics Links Directory : Splicing

There are links that deal with the splicing of gene sequences in this section.

SplicePort - (Found July 8, 2008 )

SplicePort makes splice-site predictions for submitted sequences, and allows browsing of the motifs used in the prediction. Feature selection is optimized for human splice sites.
http://spliceport.cs.umd.edu:2000/SplicingAnalyser2.html

Rescue-ESE - (Found July 8, 2008 )

Server for the identification of hexnucleotide exonic splicing enhancers (ESEs). Also contains a list of 238 identified ESEs for human genes.
http://genes.mit.edu/burgelab/rescue-ese/

ProSplicer - (Found July 8, 2008 )

Database which stores alternative splicing information generated from EST, mRNA and protein alignments with genomic sequence; text-based queries and graphical views of putative splice variants.
http://bioinfo.csie.ncu.edu.tw/ProSplicer/

Netgene2 - (Found July 8, 2008 )

The NetGene2 server is a service producing neural network predictions of splice sites in human, C. elegans and A. thaliana DNA.
http://www.cbs.dtu.dk/services/NetGene2/

GeneSplicer - (Found July 8, 2008 )

A fast, flexible system for detecting splice sites in the genomic DNA of various eukaryotes. The system has been trained and tested successfully on Plasmodium falciparum (malaria), Arabidopsis thaliana, human, Drosophila, and rice.
http://www.tigr.org/tdb/GeneSplicer/

ESEfinder - (Found July 8, 2008 )

ESEfinder is a web-based resource for identifing putative ESEs (exonic splicing enhancers), cis-acting motifs responsible for enhancing splicing.
http://rulai.cshl.edu/tools/ESE/

BIPASS - (Found July 8, 2008 )

BioInformatics Pipeline Alternative Splicing Services (BIPASS) provides access to alternative splicing information extracted from various public databases and allows users to submit their own transcript and genome sequences for alternative splicing predictions.
http://bip.umiacs.umd.edu:8080/

AStalavista - (Found July 8, 2008 )

AStalavista (alternative splicing transcriptional landscape visualization tool) dynamically identifies, extracts, and displays alternative splicing events from whole genome annotations and user provided gene sets.
http://genome.imim.es/astalavista/

ASmodeler - (Found July 8, 2008 )

Gene modeling server which focuses on the modeling of alternative splicing. It is based on the alignment of mRNA, EST and protein sequences and combines genome-based clustering and transcript assembly. Supports human, mouse and rat genomes.
http://genome.ewha.ac.kr/ECgene/ASmodeler/

ASGS - (Found July 8, 2008 )

Alternative Splicing Graph Server (ASGS) reads a GFF formatted file for a single gene and creates a splicing graph generated as a directed acyclic graph from the transcript information in the GFF file.
http://binf1.chem.mq.edu.au:8081/asgs/