Bioinformatics Links Directory : 3-D Structure Retrieval, ViewingLinks to tools for visualization of 3D structures are found here. This section also contains links to many 3D structure databases.MinActionPath- (Found July 8, 2008 ) MinActionPath calculates the most-probable trajectory between two known structural states of a protein.http://lorentz.immstr.pasteur.fr/joel/index.php MMDB- (Found July 8, 2008 ) Molecular Modelling Database of 3-D structures; experimentally determined structures only.http://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml MovieMaker- (Found July 8, 2008 ) MovieMaker is a web server that accepts PDB files or PDB accession numbers as input and allows short (10 sec) downloadable movies to be generated of protein motions and interactions.http://wishart.biology.ualberta.ca/moviemaker/ YASARA- (Found July 8, 2008 ) YASARA (Yet Another Scientific Artificial Reality Application) is a software package for visualization, simulation and modeling of molecules. It uses Portable Vector Language (PVL) which allows the visualization of very large proteins. YASARA View is available for free, and is primarily a visualization tool.http://www.yasara.org/ |