Bioinformatics Links Directory : Phylogeny ReconstructionThis section contains links to tools and databases for phylogeny reconstruction, including taxonomy resources.Orthologue Search Service- (Found June 29, 2008 ) BLAST a protein sequence then perform automated phylogenetic analysis to detect orthologous sequences.http://dove.embl-heidelberg.de/Blast2e/ PAL2NAL- (Found June 29, 2008 ) PAL2NAL converts a multiple sequence alignment of proteins and the corresponding DNA (or mRNA) sequences into a codon alignment. Synonymous (Ks) and non-synonymous (Ka) substitution rates can be calculated.http://coot.embl.de/pal2nal/ Phylemon- (Found June 29, 2008 ) Phylemon is a server that integrates a suite of tools for multiple sequence alignment, phylogeny, and evolutionary tests from the most popular stand-alone phylogenetic and evolutionary analysis programs.http://phylemon.bioinfo.cipf.es/cgi-bin/tools.cgi Weighbor- (Found June 29, 2008 ) Weighbor is a tool for building phylogenetic trees from distance matrices. It employs a weighted version of the neighbour-joining method in which longer distances in the matrix are given less weight.http://www.t10.lanl.gov/billb/weighbor/index.html |