Bioinformatics Links Directory : Other OrganismsThis section includes links to genome databases, resource centers, and consortiums for various other model organisms.AHMII- (Found July 2, 2008 ) Agent to Help Microbial Information Integration (AHMII) offers a search engine for particular strains present in culture collections and databases in bacteria, fungi, yeasts and cell lines.http://www.wdcm.org/AHMII/ahmii.html UCSC SARS Genome Browser Gateway- (Found July 2, 2008 ) Provides a rapid and reliable display of any requested portion of the SARS genome at any scale, together with dozens of aligned annotation tracks.http://genome.ucsc.edu/cgi-bin/hgGateway?org=SARS&db=0&hgsid=27736277 Poxvirus Bioinformatics Resource Center- (Found July 2, 2008 ) Includes poxvirus genomic sequences; annotation and analysis of poxvirus genes; web-based data mining and sequence analysis tools; software for analysis of complete genomes; literature resource; repository of poxvirus species and strains; discussion forum.http://www.poxvirus.org/ PartiGeneDB- (Found July 2, 2008 ) PartiGeneDB is a database of about 300 partial genomes from eukaryotic organisms that have been assembled from EST data.http://www.partigenedb.org/ Parasite-Genome- (Found July 2, 2008 ) Parasite genome databases and genome research resources.http://www.ebi.ac.uk/parasites/parasite-genome.html jpHMM- (Found July 2, 2008 ) Jumping Profile Hidden Markov Model (jpHMM) takes a HIV-1 genome sequence and uses a pre-calculated multiple alignment of the major HIV-1 subtypes to predict the phylogenetic breakpoints and HIV subtype of the submitted sequence.http://jphmm.gobics.de/ Influenza Virus Resources- (Found July 2, 2008 ) Influenza Virus Resource presents data obtained from the NIAID Influenza Genome Sequencing Project as well as from GenBank, combined with tools for flu sequence analysis and annotation. In addition, it provides links to other resources that contain flu sequences, publications and general information about flu viruses.http://www.ncbi.nlm.nih.gov/genomes/FLU/FLU.html Genotyping - NCBI- (Found July 2, 2008 ) The Genotyping tool at the NCBI identifies the genotype (or subtype) of viral sequences by using a sliding window approach to BLAST analysis against reference sequences for different viral subtypes. Results are shown as a graphical output plotting the top-scoring genotype. An alignment tool is also available.http://www.ncbi.nih.gov/projects/genotyping/formpage.cgi Geno2pheno- (Found July 2, 2008 ) Geno2pheno takes as input an HIV-1 pol-gene DNA sequence and estimates phenotypic drug resistance to 17 antiretroviral drugs.http://www.geno2pheno.org/cgi-bin/geno2pheno.pl Dicty WorkBench- (Found July 2, 2008 ) Dictyostelium discoideum genome annotation and analysis portal; specialized Dictyostelium sequence and function annotaton database; the following features are available for querying: browse entire list of ORFs, view annotations, PFAM domain information, ORF detailshttp://dictyworkbench.sdsc.edu/ |